GLAM2: Gapped Local Alignment of Motifs
Version 1056

/Users/t.bailey/meme_git/meme-xstreme/src/glam2 -M -r 3 -n 100 -O results/glam2_1 p common/At.s
Sequences: 19
Greatest sequence length: 1112
Residue counts: A=538 C=175 D=553 E=721 F=419 G=664 H=244 I=516 K=663 L=1000 M=235 N=484 P=466 Q=340 R=623 S=922 T=503 V=633 W=108 Y=326 x=0

Score: 675.899  Columns: 29  Sequences: 19

                  *****************************
At1g01140.1_  196 YDGAAADVWSCGVILFVLMAGYLPFDEPN  224 + 60.0
At1g01140.2_  196 YDGAAADVWSCGVILFVLMAGYLPFDEPN  224 + 60.0
At1g01140.3_  196 YDGAAADVWSCGVILFVLMAGYLPFDEPN  224 + 60.0
At1g01450.1_  221 KYSDKSDVYSFGMVSFELLTGKVPFEDSH  249 + 43.1
At1g01540.1_  332 MLNEKSDIYSFGILIMEIITGRNPVDYSR  360 + 57.3
At1g01540.2_  332 MLNEKSDIYSFGILIMEIITGRNPVDYSR  360 + 57.3
At1g01560.1_  217 EYTAAIDIWSVGCILGEIMTRE.PLFPGR  244 + 52.5
At1g01740.1_  225 RITAESVIYSFGTLLLDLLTGK.HIPPSH  252 + 24.0
At1g02970.1_  420 EHLDKVDIFSLGVTVYELIKGS.PLTESR  447 + 36.6
At1g03740.1_  390 HYGVGVDLWSTGCILGELYAGK.PILPGK  417 + 33.4
At1g03920.1_  351 GYGMECDWWSLGAIMYEMLVGY.PPFYAD  378 + 29.8
At1g03930.1_  189 EQSRRDDLEALGYVLMYFLKGSLPWQGLK  217 + 37.8
At1g04210.1_  999 FYGLEVDIWSFGCLIFELLTLQNPYFDLS 1027 + 45.3
At1g04440.1_  189 EQSRRDDLESLGYLLMYFLRGSLPWQGLR  217 + 38.9
At1g04700.1_  951 RVSEKVDVFSFGIVMWEILTGEEPYANLH  979 + 42.5
At1g05100.1_  180 RQGKESDIWAVGCTVIEMVTGSQPWIGAD  208 + 40.0
At1g05700.1_  737 GLNEKSDIYSFGVVLLEMITGKTVIKESQ  765 + 43.4
At1g06390.1_  247 EYTASIDIWSAGCVLAELLLGQ.PLFPGE  274 + 55.7
At1g06390.2_  247 EYTASIDIWSAGCVLAELLLGQ.PLFPGE  274 + 55.7

                  EYGAKSDIWSFGCILFELLTGKLPFDESR
                    SEAV VY L VV M IIA SN LFPG 
                    T E        L    M  Y     L 

 A  C  D  E  F  G  H  I  K  L  M  N  P  Q  R  S  T  V  W  Y Del Ins Score
 0  0  0  6  1  2  1  0  1  0  2  0  0  0  3  0  0  0  0  3   0      5.92
                                                                  0 -0.102
 0  0  3  0  0  0  1  1  0  3  0  0  0  3  0  0  0  1  0  7   0      13.8
                                                                  0 -0.102
 0  0  0  0  0  7  0  0  0  1  0  3  0  0  0  4  4  0  0  0   0      14.8
                                                                  0 -0.102
 7  0  2  4  0  0  0  0  1  1  1  0  0  0  2  0  0  1  0  0   0      6.36
                                                                  0 -0.102
 4  0  0  4  0  1  0  0  6  0  0  0  0  0  2  2  0  0  0  0   0      12.2
                                                                  0 -0.102
 3  1  2  0  0  0  0  3  0  0  0  0  0  0  0  6  0  4  0  0   0      8.57
                                                                  0 -0.102
 0  0 18  0  0  0  0  0  0  0  0  0  0  0  0  0  0  1  0  0   0      59.2
                                                                  0 -0.102
 0  0  0  0  0  0  0 10  0  3  0  0  0  0  0  0  0  5  1  0   0      34.2
                                                                  0 -0.102
 0  0  0  2  2  0  0  0  0  0  0  0  0  0  0  0  0  0 10  5   0      54.4
                                                                  0 -0.102
 2  0  0  0  0  0  0  0  0  0  0  0  0  0  0 17  0  0  0  0   0      48.7
                                                                  0 -0.102
 2  3  0  0  7  0  0  0  0  4  0  0  0  0  0  0  1  2  0  0   0      18.7
                                                                  0 -0.102
 0  0  0  0  0 19  0  0  0  0  0  0  0  0  0  0  0  0  0  0   0      64.0
                                                                  0 -0.102
 1  6  0  0  0  0  0  3  0  0  1  0  0  0  0  0  1  5  0  2   0      22.1
                                                                  0 -0.102
 0  0  0  0  0  0  0  6  0  5  0  0  0  0  0  0  2  6  0  0   0      26.6
                                                                  0 -0.102
 0  0  0  0  0  0  0  3  0 11  2  0  0  0  0  1  0  2  0  0   0      25.2
                                                                  0 -0.102
 2  0  0  0  5  2  0  1  0  2  4  0  0  0  0  0  0  0  1  2   0      10.8
                                                                  0 -0.102
 0  0  1 13  0  0  0  0  0  0  0  0  0  0  0  0  0  3  0  2   0      30.7
                                                                  0 -0.102
 0  0  0  0  2  0  0  4  0 10  3  0  0  0  0  0  0  0  0  0   0      33.4
                                                                  0 -0.102
 0  0  0  0  0  0  0  4  0  9  4  0  0  0  0  0  0  1  0  1   0      29.1
                                                                  0 -0.102
 4  0  0  0  0  0  0  0  2  2  0  0  0  0  1  0  9  1  0  0   0      13.8
                                                                  0 -0.102
 0  0  0  0  0 17  0  0  0  1  0  0  0  0  1  0  0  0  0  0   0      45.9
                                                                  0 -0.102
 0  0  0  2  0  0  0  0  4  0  0  0  0  3  2  4  0  0  0  4   0      12.6
                                                                  0 -0.102
 0  0  0  1  0  0  0  0  0  5  0  3  0  1  0  0  1  1  0  0   7     -19.9
                                                                  0 -0.102
 0  0  0  0  0  0  1  0  0  0  0  0 17  0  0  0  0  1  0  0   0      55.5
                                                                  0 -0.102
 0  0  0  0  4  0  0  3  0  4  0  0  1  0  0  0  0  2  3  2   0      14.6
                                                                  0 -0.102
 1  0  5  1  5  0  0  1  1  1  0  0  1  2  0  0  1  0  0  0   0      2.44
                                                                  0 -0.102
 0  0  2  5  0  3  0  0  0  0  0  1  5  0  0  0  0  0  0  3   0      12.7
                                                                  0 -0.102
 2  0  0  0  0  4  0  0  0  4  0  0  3  0  0  6  0  0  0  0   0      10.1
                                                                  0 -0.102
 0  0  2  2  0  0  3  0  2  0  0  3  0  1  5  1  0  0  0  0   0      12.3

Score: 313.467  Columns: 30  Sequences: 15

                  ***.***..***********.*************
At1g01140.1_   11 ASRTRVG..NYEMG.RTLGE.GSFA.KVKYAKNT   39 + 57.6
At1g01140.2_   11 ASRTRVG..NYEMG.RTLGE.GSFA.KVKYAKNT   39 + 57.6
At1g01140.3_   11 ASRTRVG..NYEMG.RTLGE.GSFA.KVKYAKNT   39 + 57.6
At1g01540.1_  291 QWNAKVS..DFGLA.KLLGSESSYV.TTRVMGTF  320 + 29.5
At1g01540.2_  291 QWNAKVS..DFGLA.KLLGSESSYV.TTRVMGTF  320 + 29.5
At1g01560.1_  178 CDL.KIG..DFGLA.RTKSE.TDFM.TEYVVTRW  205 + 5.53
At1g02970.1_  242 LSR.YLT..DFHEI.RQIGA.GHFS.RVFKVLKR  269 + 13.6
At1g03740.1_  206 APR.RAN..TFEKL.EKIGQ.GTYS.SVYRARDL  233 + 15.3
At1g03920.1_  127 LQRHKMGADDFELL.TMIGK.GAFG.EVRVVREI  157 + 27.8
At1g03930.1_    1 MDL.VIGG.KFKLG.RKIGS.GSFG.ELYLGINV   29 + 38.8
At1g04440.1_    1 MDR.VVGG.KFKLG.RKLGS.GSFG.EIFLGVNV   29 + 43.3
At1g04700.1_  758 LQIIKNT..DLEDL.HELGS.GTFG.TVYYGKWR  786 + 22.8
At1g05700.1_  554 ADVIKMT..N.NFG.QVLGK.GGFG.TVYHGFYD  581 + 17.0
At1g06390.1_   62 GEP.KQT..ISYMAERVVGT.GSFG.IVFQAKCL   90 + 41.9
At1g06390.2_   62 GEP.KQT..ISYMAERVVGT.GSFG.IVFQAKCL   90 + 41.9

                  ADR KVG  DFELGERTLGS GSFG TVYVAKNL
                  LS  R T  NYGMA  KI E   YA E FYG  T
                               L  V         K K V   
                                              R     

 A  C  D  E  F  G  H  I  K  L  M  N  P  Q  R  S  T  V  W  Y Del Ins Score
 5  1  0  0  0  2  0  0  0  3  2  0  0  2  0  0  0  0  0  0   0      3.42
                                                                  0 -0.0953
 0  0  4  2  0  0  0  0  0  0  0  0  1  2  0  4  0  0  2  0   0      8.37
                                                                  0 -0.0953
 0  0  0  0  0  0  0  1  0  2  0  2  2  0  7  0  0  1  0  0   0      7.99
                                                                  8 -27.6
 0  0  0  0  0  0  0  0  8  0  0  0  0  0  4  0  0  2  0  1   0      21.1
                                                                  0 -0.0953
 1  0  0  0  0  0  0  2  0  1  2  1  0  2  0  0  0  6  0  0   0      7.29
                                                                  0 -0.0953
 0  0  0  0  0  7  0  0  0  0  0  1  0  0  0  2  5  0  0  0   0      17.7
                                                                  4 -19.6
 0  0  6  0  0  0  0  2  2  0  0  4  0  0  0  0  1  0  0  0   0      13.0
                                                                  0 -0.0953
 0  0  0  0  8  0  0  0  0  1  0  0  0  0  0  2  0  0  0  3   1      18.6
                                                                  0 -0.0953
 0  0  0  6  0  3  1  0  2  0  0  1  0  0  0  0  0  0  0  2   0      8.77
                                                                  0 -0.0953
 0  0  1  1  1  0  0  0  1  6  5  0  0  0  0  0  0  0  0  0   0      11.2
                                                                  0 -0.0953
 5  0  0  0  0  6  0  1  0  3  0  0  0  0  0  0  0  0  0  0   0      11.4
                                                                  0 -0.0953
 0  0  0  2  0  0  0  0  0  0  0  0  0  0  0  0  0  0  0  0  13     -13.8
                                                                  0 -0.0953
 0  0  0  1  0  0  1  0  2  0  0  0  0  1  9  0  1  0  0  0   0      20.2
                                                                  0 -0.0953
 0  0  0  1  0  0  0  0  3  2  1  0  0  1  0  0  4  3  0  0   0      2.87
                                                                  0 -0.0953
 0  0  0  0  0  0  0  4  1  8  0  0  0  0  0  0  0  2  0  0   0      18.9
                                                                  0 -0.0953
 0  0  0  0  0 14  0  0  0  0  0  0  0  0  0  1  0  0  0  0   0      42.2
                                                                  0 -0.0953
 1  0  0  4  0  0  0  0  2  0  0  0  0  1  0  5  2  0  0  0   0      9.15
                                                                  2 -13.8
 0  0  0  0  0 12  0  0  0  0  0  0  0  0  0  2  1  0  0  0   0      30.2
                                                                  0 -0.0953
 1  0  1  0  0  1  1  0  0  0  0  0  0  0  0  9  2  0  0  0   0      13.2
                                                                  0 -0.0953
 0  0  0  0 12  0  0  0  0  0  0  0  0  0  0  0  0  0  0  3   0      49.2
                                                                  0 -0.0953
 3  0  0  0  0  7  0  0  0  0  1  0  0  0  0  2  0  2  0  0   0      11.8
                                                                  0 -0.0953
 0  0  0  0  0  0  0  0  0  0  0  0  0  0  0  0  0  0  0  0  15     -11.1
                                                                  0 -0.0953
 0  0  0  3  0  0  0  2  3  0  0  0  0  0  1  1  5  0  0  0   0      8.14
                                                                  0 -0.0953
 0  0  0  1  0  0  0  1  0  1  0  0  0  0  0  0  2 10  0  0   0      20.4
                                                                  0 -0.0953
 0  0  0  0  4  0  0  0  3  0  0  0  0  0  3  0  0  0  0  5   0      20.4
                                                                  0 -0.0953
 0  0  0  0  0  0  1  0  1  2  0  0  0  2  1  0  0  4  0  4   0      6.31
                                                                  0 -0.0953
 6  0  0  0  0  4  0  0  0  0  2  0  0  0  0  0  0  3  0  0   0      15.0
                                                                  0 -0.0953
 0  0  0  0  1  2  0  1  6  1  0  0  0  0  2  0  1  1  0  0   0      2.03
                                                                  0 -0.0953
 0  2  1  1  0  0  0  0  1  0  0  5  0  0  1  0  2  0  1  1   0      2.48
                                                                  0 -0.0953
 0  0  1  0  2  0  0  1  0  3  0  0  0  0  2  0  3  2  1  0   0      0.646

Score: 195.180  Columns: 22  Sequences: 18

                  **********************
At1g01140.1_  314 PVSMNAFELISSSSEFSLENLF  335 + 38.5
At1g01140.2_  316 PVSMNAFELISSSSEFSLENLF  337 + 38.5
At1g01140.3_  314 PVSMNAFELISSSSEFSLENLF  335 + 38.5
At1g01450.1_  259 IR.AGERPLFPFNSPKFITNLT  279 + 18.2
At1g01540.1_    6 AAFLNT.ELSKPTSIFGLR.LW   25 + 22.2
At1g01540.2_    6 AAFLNT.ELSKPTSIFGLR.LW   25 + 22.2
At1g01560.1_  132 IR.SNQ.PLTDDHSRFFLYQLL  151 + 18.0
At1g01740.1_  268 SCLEGQFS.DSDGTE.LVR.LT  286 + 1.59
At1g02970.1_  453 IK.EGKLPLLPGHSL.QLQQLL  472 + 15.3
At1g03740.1_  406 ELYAGK.PILPGKTE..VEQLH  424 + 10.9
At1g03920.1_  401 RLSRGARDLI.GKLLCSVNQRL  421 + 16.7
At1g03930.1_  140 RK.ANQVYIIDFGLGKKYRDLQ  160 + 23.0
At1g04210.1_   85 KFFSNEIDLFPPELG.NLVNLE  105 + 11.2
At1g04440.1_  140 RK.ANQVYIIDYGLAKKYRDLQ  160 + 19.6
At1g04700.1_  335 RNSFGQ.Q.SPPTSPFSVHKRA  354 + 7.44
At1g05700.1_  388 PCLPND.YIW.EGLNCSYDSLT  407 + 12.2
At1g06390.1_  263 ELLLGQ.PLF.PGEN.SVDQLV  281 + 24.2
At1g06390.2_  263 ELLLGQ.PLF.PGEN.SVDQLV  281 + 24.2

                  PLSANQFPLIPPGSEFSLRQL 
                  R LLGAREIFS  L K VEN  
                    F   V   D           

 A  C  D  E  F  G  H  I  K  L  M  N  P  Q  R  S  T  V  W  Y Del Ins Score
 2  0  0  3  0  0  0  3  1  0  0  0  4  0  4  1  0  0  0  0   0      5.92
                                                                  0 -0.100
 2  2  0  0  1  0  0  0  3  4  0  1  0  0  2  0  0  3  0  0   0      0.904
                                                                  0 -0.100
 0  0  0  0  3  0  0  0  0  4  0  0  0  0  0  5  0  0  0  1   5     -7.25
                                                                  0 -0.100
 4  0  0  2  1  0  0  0  0  4  3  0  1  0  1  2  0  0  0  0   0      1.59
                                                                  0 -0.100
 0  0  0  0  0  8  0  0  0  0  0 10  0  0  0  0  0  0  0  0   0      44.2
                                                                  0 -0.100
 4  0  1  2  0  0  0  0  2  0  0  0  0  7  0  0  2  0  0  0   0      16.8
                                                                  0 -0.100
 0  0  0  0  4  0  0  1  0  1  0  0  0  0  2  0  0  2  0  0   8     -15.8
                                                                  0 -0.100
 0  0  2  5  0  0  0  0  0  0  0  0  6  1  0  1  0  0  0  3   0      14.7
                                                                  0 -0.100
 0  0  0  0  0  0  0  4  0 12  0  0  0  0  0  0  0  0  0  0   2      24.0
                                                                  0 -0.100
 0  0  1  0  4  0  0  6  0  2  0  0  0  0  0  3  1  0  1  0   0      9.31
                                                                  0 -0.100
 0  0  3  0  0  0  0  0  2  0  0  0  5  0  0  4  0  0  0  0   4     -3.85
                                                                  0 -0.100
 0  0  2  1  2  3  0  0  0  0  0  0  6  0  0  3  0  0  0  1   0      6.07
                                                                  0 -0.100
 0  0  0  1  0  6  2  0  2  0  0  1  0  0  0  3  3  0  0  0   0      9.32
                                                                  0 -0.100
 0  0  0  2  0  0  0  0  0  5  0  0  0  0  0  9  2  0  0  0   0      17.4
                                                                  0 -0.100
 1  0  0  5  0  2  0  2  0  2  0  3  2  0  1  0  0  0  0  0   0     -0.929
                                                                  0 -0.100
 0  2  0  0  7  0  0  0  3  0  0  0  0  0  0  0  0  0  0  0   6     -1.12
                                                                  0 -0.100
 0  0  0  0  2  2  0  0  2  1  0  1  0  1  0  8  0  0  0  0   1     -1.17
                                                                  0 -0.100
 0  0  0  0  0  0  0  1  0  8  0  0  0  0  0  0  0  6  0  3   0      25.5
                                                                  0 -0.100
 0  0  3  4  0  0  1  0  0  0  0  1  0  1  5  0  1  1  0  1   0      4.77
                                                                  0 -0.100
 0  0  2  0  0  0  0  0  1  0  0  5  0  6  0  1  0  0  0  0   3      4.15
                                                                  0 -0.100
 0  0  0  0  0  0  0  0  0 16  0  0  0  0  2  0  0  0  0  0   0      40.2
                                                                  0 -0.100
 1  0  0  1  3  0  1  0  0  3  0  0  0  2  0  0  3  2  2  0   0      2.66

