* using log directory '/home/kingaa/projects/Rpkg/subplex/revdep/mvMORPH.Rcheck'
* using R version 4.2.2 (2022-10-31)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option '--as-cran'
* checking for file 'mvMORPH/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'mvMORPH' version '1.1.6'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'mvMORPH' can be installed ... [30s/34s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [54s/91s] NOTE
.aov.mvgls.perm.I : <anonymous>: local variable ‘Null’ assigned but may
  not be used
.aov.mvgls.perm.I: local variable ‘B0’ assigned but may not be used
.aov.mvgls.perm.mar : <anonymous>: local variable ‘Null’ assigned but
  may not be used
.aov.mvgls.perm.mar: local variable ‘B0’ assigned but may not be used
.aov.mvgls.perm.mar: local variable ‘Proj_full’ assigned but may not be
  used
.aov.mvgls.perm.mar: local variable ‘nb.resid’ assigned but may not be
  used
.penalizedCov: local variable ‘p’ assigned but may not be used
EIC.mvgls: local variable ‘penalty’ assigned but may not be used
EIC.mvgls: local variable ‘target’ assigned but may not be used
EIC.mvgls: local variable ‘tuning’ assigned but may not be used
GIC.mvgls: local variable ‘method’ assigned but may not be used
LRT: local variable ‘simulations’ assigned but may not be used
ancestral.mvgls: local variable ‘p’ assigned but may not be used
estim: local variable ‘names_traits’ assigned but may not be used
matrixParam: local variable ‘sigma’ assigned but may not be used
mv.Precalc: local variable ‘decomp’ assigned but may not be used
mv.Precalc: local variable ‘mod_stand’ assigned but may not be used
mv.Precalc: local variable ‘model’ assigned but may not be used
mvBM: local variable ‘value’ assigned but may not be used
mvEB: local variable ‘IAr’ assigned but may not be used
mvEB: local variable ‘JAr’ assigned but may not be used
mvEB: local variable ‘warning’ assigned but may not be used
mvOUTS: local variable ‘mt’ assigned but may not be used
mvRWTS: local variable ‘constraint’ assigned but may not be used
mvRWTS: local variable ‘dat’ assigned but may not be used
mvRWTS: local variable ‘mt’ assigned but may not be used
mvRWTS: local variable ‘root’ assigned but may not be used
mvRWTS: local variable ‘sizeD’ assigned but may not be used
mvgls: local variable ‘call’ assigned but may not be used
mvgls: local variable ‘glsStruct’ assigned but may not be used
mvgls: local variable ‘ncores’ assigned but may not be used
mvgls.dfa: local variable ‘normalized’ assigned but may not be used
plot.mvgls: local variable ‘pred’ assigned but may not be used
plot.mvgls: local variable ‘scoreVar2’ assigned but may not be used
predict.mvgls.dfa: local variable ‘grp’ assigned but may not be used
summary.mvgls: local variable ‘meth’ assigned but may not be used
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [285s/67s] OK
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
stationary 13.338 44.836  11.270
mvSHIFT    11.973 39.705   8.848
halflife   10.630 32.088   9.373
mvRWTS      7.946 26.995   5.868
estim       8.592 23.248   6.719
mvBM        6.378 14.111   6.341
LRT         2.740  6.987   1.984
mvEB        1.523  5.056   1.369
mvSIM       1.907  3.894   1.888
** found \donttest examples: check also with --run-donttest
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... [852s/166s] OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 NOTE
