Type: Package
Package: sdmTMB
Title: Spatial and Spatiotemporal SPDE-Based GLMMs with 'TMB'
Version: 0.4.0
Authors@R: c(
    person(c("Sean", "C."), "Anderson", , "sean@seananderson.ca",
           role = c("aut", "cre"),
           comment = c(ORCID = "0000-0001-9563-1937")),
    person(c("Eric", "J."), "Ward", role = "aut",
           comment = c(ORCID = "0000-0002-4359-0296")),
    person(c("Lewis", "A.", "K."), "Barnett", role = "aut",
           comment = c(ORCID = "0000-0002-9381-8375")),
    person(c("Philina", "A."), "English", role = "aut",
           comment = c(ORCID = "0000-0003-2992-6782")),
    person(c("James", "T."), "Thorson", role = c("ctb", "cph"),
           comment = c(ORCID = "0000-0001-7415-1010", "VAST author")),
    person("Joe", "Watson", role = "ctb", comment = "Censored Poisson"),
    person("Julia", "Indivero", role = c("ctb"),
           comment = c("Vignette writing")),
    person(c("Jillian", "C."), "Dunic", role = c("ctb"),
           comment = c(ORCID = "0000-0002-0729-3083")),
    person(c("Cole", "C."), "Monnahan", role = c("ctb", "cph"),
           comment = c(ORCID = "0000-0003-0871-6700", "VAST contributor")),
    person("Mollie", "Brooks", role = c("ctb", "cph"),
           comment = c(ORCID = "0000-0001-6963-8326", "glmmTMB author")),
    person("Ben", "Bolker", role = c("ctb", "cph"),
           comment = c(ORCID = "0000-0002-2127-0443", "glmmTMB author")),
    person("Kasper", "Kristensen", role = c("ctb", "cph"),
           comment = "TMB/glmmTMB author"),
    person("Martin", "Maechler", role = c("ctb", "cph"),
           comment = c(ORCID = "0000-0002-8685-9910", "glmmTMB author")),
    person("Arni", "Magnusson", role = c("ctb", "cph"),
           comment = c(ORCID = "0000-0003-2769-6741", "glmmTMB author")),
    person(c("Hans", "J."), "Skaug", role = c("ctb", "cph"),
           comment = "glmmTMB author, SPDE barrier"),
    person("Anders", "Nielsen", role = c("ctb", "cph"),
           comment = c(ORCID = "0000-0001-9683-9262", "glmmTMB author")),
    person("Casper", "Berg", role = c("ctb", "cph"),
           comment = c(ORCID = "0000-0002-3812-5269", "glmmTMB author")),
    person("Koen", "van Bentham", role = c("ctb", "cph"),
           comment = "glmmTMB author"),
    person(c("Olav", "Nikolai"), "Breivik", role = c("ctb", "cph"),
           comment = "SPDE barrier"),
    person("Simon", "Wood", role = c("ctb", "cph"),
           comment = "mgcv: smoother prediction"),
    person("Paul-Christian", "Bürkner", role = c("ctb", "cph"),
           comment = "brms: smoother matrix parsing"),
    person(paste("His Majesty the King in Right of Canada, as represented by",
           "the Minister of the Department of Fisheries and Oceans"),
           role = "cph")
  )
Description: Implements spatial and spatiotemporal GLMMs (Generalized Linear
    Mixed Effect Models) using 'TMB', 'INLA', and the SPDE (Stochastic Partial
    Differential Equation) approximation to Gaussian random fields. One common
    application is for spatially explicit species distribution models (SDMs).
    See Anderson et al. (2022) <doi:10.1101/2022.03.24.485545>.
License: GPL-3
Copyright: inst/COPYRIGHTS
URL: https://pbs-assess.github.io/sdmTMB/index.html,
    https://pbs-assess.github.io/sdmTMB/
BugReports: https://github.com/pbs-assess/sdmTMB/issues
Depends:
    R (>= 3.5.0)
Imports:
    assertthat,
    clisymbols,
    cli,
    fmesher,
    fishMod,
    generics,
    graphics,
    lifecycle,
    lme4,
    Matrix,
    methods,
    mgcv,
    mvtnorm,
    nlme,
    rlang,
    stats,
    TMB (>= 1.8.0)
Suggests:
    dplyr,
    effects (>= 4.0-1),
    estimability,
    emmeans (>= 1.4),
    future,
    future.apply,
    ggeffects,
    ggforce,
    glmmTMB,
    ggplot2,
    knitr,
    rmarkdown,
    sf,
    splancs,
    testthat,
    tibble,
    visreg
LinkingTo:
    RcppEigen,
    TMB
VignetteBuilder:
    knitr
ByteCompile: true
Config/testthat/edition: 3
Config/testthat/parallel: true
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
SystemRequirements: GNU make
