Package: MsCoreUtils
Title: Core Utils for Mass Spectrometry Data
Version: 1.14.1
Description: MsCoreUtils defines low-level functions for mass
    spectrometry data and is independent of any high-level data
    structures. These functions include mass spectra processing
    functions (noise estimation, smoothing, binning), quantitative
    aggregation functions (median polish, robust summarisation, ...),
    missing data imputation, data normalisation (quantiles, vsn, ...)
    as well as misc helper functions, that are used across high-level
    data structure within the R for Mass Spectrometry packages.
Authors@R: c(person(given = "RforMassSpectrometry Package Maintainer",
                    email = "maintainer@rformassspectrometry.org",
                    role = "cre"),
             person(given = "Laurent", family = "Gatto",
                    email = "laurent.gatto@uclouvain.be",
                    comment = c(ORCID = "0000-0002-1520-2268"),
                    role = "aut"),
             person(given = "Johannes", family = "Rainer",
                    email = "Johannes.Rainer@eurac.edu",
                    comment = c(ORCID = "0000-0002-6977-7147"),
                    role = "aut"),
             person(given = "Sebastian", family = "Gibb",
                    email = "mail@sebastiangibb.de",
                    comment = c(ORCID = "0000-0001-7406-4443"),
                    role = "aut"),
             person(given = "Adriaan", family = "Sticker", role = "ctb"),
             person(given = "Sigurdur", family = "Smarason", role = "ctb"),
             person(given = "Thomas", family = "Naake", role = "ctb"),
             person(given = "Josep Maria", family = "Badia Aparicio",
                    comment = c(ORCID = "0000-0002-5704-1124"),
                    role = "ctb"),
             person(given = "Michael", family = "Witting",
                    email = "michael.witting@helmholtz-muenchen.de",
                    role = "ctb",
                    comment = c(ORCID = "0000-0002-1462-4426")),
             person(given = "Samuel", family = "Wieczorek", role = "ctb"),
             person(given = "Roger", family = "Gine Bertomeu",
                    email = "roger.gine@iispv.cat",
                    comment = c(ORCID = "0000-0003-0288-9619"),
                    role = "ctb"),
             person(given = "Mar", family = "Garcia-Aloy",
                    email = "mar.garcia@fmach.it",
                    comment = c(ORCID = "0000-0002-1330-6610"),
                    role = "ctb"))
Depends: R (>= 3.6.0)
Imports: methods, S4Vectors, MASS, stats, clue
Suggests: testthat, knitr, BiocStyle, rmarkdown, roxygen2, imputeLCMD,
        impute, norm, pcaMethods, vsn, Matrix, preprocessCore,
        missForest
Enhances: HDF5Array
License: Artistic-2.0
Encoding: UTF-8
VignetteBuilder: knitr
LinkingTo: Rcpp
BugReports: https://github.com/RforMassSpectrometry/MsCoreUtils/issues
URL: https://github.com/RforMassSpectrometry/MsCoreUtils
biocViews: Infrastructure, Proteomics, MassSpectrometry, Metabolomics
Roxygen: list(markdown=TRUE)
RoxygenNote: 7.2.3
git_url: https://git.bioconductor.org/packages/MsCoreUtils
git_branch: RELEASE_3_18
git_last_commit: 3f5f1d5
git_last_commit_date: 2023-11-03
Date/Publication: 2023-11-03
NeedsCompilation: yes
Packaged: 2023-11-03 21:36:02 UTC; biocbuild
Author: RforMassSpectrometry Package Maintainer [cre],
  Laurent Gatto [aut] (<https://orcid.org/0000-0002-1520-2268>),
  Johannes Rainer [aut] (<https://orcid.org/0000-0002-6977-7147>),
  Sebastian Gibb [aut] (<https://orcid.org/0000-0001-7406-4443>),
  Adriaan Sticker [ctb],
  Sigurdur Smarason [ctb],
  Thomas Naake [ctb],
  Josep Maria Badia Aparicio [ctb]
    (<https://orcid.org/0000-0002-5704-1124>),
  Michael Witting [ctb] (<https://orcid.org/0000-0002-1462-4426>),
  Samuel Wieczorek [ctb],
  Roger Gine Bertomeu [ctb] (<https://orcid.org/0000-0003-0288-9619>),
  Mar Garcia-Aloy [ctb] (<https://orcid.org/0000-0002-1330-6610>)
Maintainer: RforMassSpectrometry Package Maintainer <maintainer@rformassspectrometry.org>
